  {"id":229,"date":"2016-02-16T12:06:46","date_gmt":"2016-02-16T18:06:46","guid":{"rendered":"http:\/\/www.vanderbilt.edu\/cit\/?page_id=229"},"modified":"2025-04-29T10:30:56","modified_gmt":"2025-04-29T16:30:56","slug":"publications-useful-links-cit","status":"publish","type":"page","link":"https:\/\/www.vanderbilt.edu\/cit\/publications-useful-links-cit\/","title":{"rendered":"Publications &amp; Useful Links"},"content":{"rendered":"<div class=\"flex_column av_one_full  flex_column_div av-zero-column-padding first  avia-builder-el-0  el_before_av_one_half  avia-builder-el-first  \" style='border-radius:0px; '><div  style='background:#f2f2f2;color:#3a3a3a;border-color:#bababa;' class='av_promobox  avia-button-no   avia-builder-el-1  avia-builder-el-no-sibling '>\t\t<div class='avia-promocontent'><\/p>\n<p style=\"text-align: center\">Below you will find a collection of publications and useful links we have prepared for shared resource center collaborators and clients.<\/p>\n<p style=\"text-align: center\">For more information regarding authorship and center acknowledgement guidelines, please visit our <a href=\"https:\/\/www.vanderbilt.edu\/cit\/center-acknowledgements-authorship\/\">Resource User Policies<\/a> hub.<\/p>\n<p>\n<\/div><\/div><\/div>\n<div class=\"flex_column av_one_half  flex_column_div av-zero-column-padding first  avia-builder-el-2  el_after_av_one_full  el_before_av_one_half  column-top-margin\" style='border-radius:0px; '><section class=\"av_textblock_section \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='avia_textblock  '   itemprop=\"text\" ><h3>Recent CIT Publications<\/h3>\n<ol>\n<li>Stark RJ, Schrimpe-Rutledge AC, Codreanu SG, Sherrod SD, McLean JA, Krispinsky LT, Lamb FS. ENDOTHELIAL-DEPENDENT VASCULAR REACTIVITY AFTER CARDIOPULMONARY BYPASS IS ASSOCIATED WITH UNIQUE METABOLOMIC SIGNATURES. Shock. 2024 Nov 1;62(5):656-662.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.1097\/SHK.0000000000002446\">10.1097\/SHK.0000000000002446<\/a><\/li>\n<li>Mouton AJ, Aitken NM, Morato JG, O&#8217;Quinn KR, do Carmo JM, da Silva AA, Omoto ACM, Li X, Wang Z, Schrimpe-Rutledge AC, Codreanu SG, Sherrod SD, McLean JA, Stanford JK, Brown JA, Hall JE. Glutamine metabolism improves left ventricular function but not macrophage-mediated inflammation following myocardial infarction. Am J Physiol Cell Physiol. 2024 Sep 1;327(3):C571-C586.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.1152\/ajpcell.00272.2024\">10.1152\/ajpcell.00272.2024<\/a><\/li>\n<li>Westland MD, Schrimpe-Rutledge AC, Codreanu SG, Sherrod SD, McLean JA, McClain MS, Cover TL. Taurine modulates host cell responses to Helicobacter pylori VacA toxin. Infect Immun. 2024 Aug 13;92(8):e0022424.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.1128\/iai.00224-24\">10.1128\/iai.00224-24<\/a><\/li>\n<li>Pfalzer AC, Shiino S, Silverman J, Codreanu SG, Sherrod SD, McLean JA, Claassen DO. Alterations in Cerebrospinal Fluid Urea Occur in Late Manifest Huntington&#8217;s Disease. J Huntingtons Dis. 2024;13(1):103-111.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.3233\/JHD-231511\">10.3233\/JHD-231511<\/a><\/li>\n<li>Schalich KM, Buendia MA, Kaur H, Choksi YA, Washington MK, Codreanu GS, Sherrod SD, McLean JA, Peek RM Jr, Acra SA, Townsend SD, Yan F. A human milk oligosaccharide prevents intestinal inflammation in adulthood via modulating gut microbial metabolism. mBio. 2024 Apr 10;15(4):e0029824.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.1128\/mbio.00298-24\">10.1128\/mbio.00298-24<\/a><\/li>\n<\/ol>\n<p>See the complete list <a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?term=Sherrod+SD%2C+McLean+JA&amp;sort=date\">HERE<\/a><\/p>\n<\/div><\/section><br \/>\n<div   class='hr hr-default   avia-builder-el-4  el_after_av_textblock  el_before_av_textblock '><span class='hr-inner ' ><span class='hr-inner-style'><\/span><\/span><\/div><br \/>\n<section class=\"av_textblock_section \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='avia_textblock  '   itemprop=\"text\" ><h3>Suggested Reading<\/h3>\n<ul>\n<li>Leaptrot KL, May JC, Dodds JN, McLean JA, Ion mobility conformational lipid atlas for highconfidence lipidomics,\u00a0<em>Nat. Commun<\/em>\u00a0<strong>2019<\/strong>, 10:985.<br \/>\nDOI:\u00a0<a href=\"https:\/\/www.nature.com\/articles\/s41467-019-08897-5\" target=\"_blank\" rel=\"noopener\">10.1038\/s41467-019-08897<\/a><\/li>\n<li>Picache JA, Rose BS, Balinski A, Leaptrot KL, Sherrod SD, May JC, McLean JA,\u00a0Collision cross section compendium to annotate and predict multi-omic compound identities,\u00a0<em>Chem Sci<\/em>\u00a0<strong>2019<\/strong>,\u00a010, 983-993.<br \/>\nDOI:\u00a0<a title=\"Link to landing page via DOI\" href=\"https:\/\/doi.org\/10.1039\/C8SC04396E\" target=\"_blank\" rel=\"noopener\">10.1039\/C8SC04396E<\/a><\/li>\n<li>Schrimpe-Rutledge AC, Codreanu SG, Sherrod SD, McLean JA, Untargeted Metabolomics Strategies \u2013 Challenges and Emerging Directions,\u00a0<em>Journal of the American Society for Mass Spectrometry\u00a0<\/em><strong>2016<\/strong>, 27:1897.<br \/>\nDOI: <a href=\"https:\/\/link.springer.com\/article\/10.1007%2Fs13361-016-1469-y\" target=\"_blank\" rel=\"nofollow noopener\">10.1007\/s13361-016-1469-y<\/a><\/li>\n<li>Patti GJ, Yanes O, Siuzdak G. Innovation: Metabolomics: the apogee of the omics trilogy. Nat Rev Mol Cell Biol. 2012 Mar 22;13(4):263-9.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.1038\/nrm3314\">10.1038\/nrm3314<\/a><\/li>\n<\/ul>\n<\/div><\/section><\/p><\/div><div class=\"flex_column av_one_half  flex_column_div av-zero-column-padding   avia-builder-el-6  el_after_av_one_half  el_before_av_hr  column-top-margin\" style='border-radius:0px; '><section class=\"av_textblock_section \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='avia_textblock  '   itemprop=\"text\" ><h3>Patents<\/h3>\n<ol>\n<li>KL Leaptrot, JC May, JA McLean,\u00a0METHODS AND SYSTEMS FOR ION MOBILITY AND MASS ANALYSIS. <a href=\"https:\/\/www.freepatentsonline.com\/y2021\/0090871.html\" target=\"_blank\" rel=\"noopener\">US Patent App. 16\/962,744, 2021<\/a><\/li>\n<li>Caprioli R., Wikswo J., McLean J., Skaar E., Norris J.L., Lacy D.B., Sherrod S., Pino J., Gutierrez D., Muszynski N.D., Farrow M. (2020) High-Throughput, Multi-Omics Approach to Determine and Validate De Novo Global Mechanisms of Action for Drugs and Toxins. <a href=\"https:\/\/patentimages.storage.googleapis.com\/ad\/64\/a4\/2d28627674621c\/US10607721.pdf\" target=\"_blank\" rel=\"noopener\"><i>U.S. Patent No. <\/i><i>U<\/i><i>S10,607,721 B2<\/i><\/a>.<\/li>\n<li>McLean, J. A., Russell, D. H., Egan, T. F., Ugarov, M. V. and Schultz, J. A. (2010) Multiplex Data Acquisition Modes for Ion Mobility-Mass Spectrometry. <a href=\"https:\/\/patents.google.com\/patent\/US7745780B2\/en\" target=\"_blank\" rel=\"noopener\"><i>U. S. Patent No. US7745780B2.<\/i><\/a><\/li>\n<\/ol>\n<\/div><\/section><br \/>\n<div   class='hr hr-default   avia-builder-el-8  el_after_av_textblock  el_before_av_textblock '><span class='hr-inner ' ><span class='hr-inner-style'><\/span><\/span><\/div><br \/>\n<section class=\"av_textblock_section \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='avia_textblock  '   itemprop=\"text\" ><h3>Useful Links\/Resources<\/h3>\n<ol>\n<li><a href=\"http:\/\/www.vanderbilt.edu\/AnS\/Chemistry\/groups\/mcleanlab\/\" target=\"_blank\" rel=\"nofollow noopener\">The McLean Group<\/a><\/li>\n<li><a href=\"http:\/\/www.vanderbilt.edu\/chemistry\/\" target=\"_blank\" rel=\"nofollow noopener\">国产传媒 Department of Chemistry<\/a><\/li>\n<li><a href=\"https:\/\/www.vumc.org\/cqs\/\" target=\"_blank\" rel=\"noopener\">Center for Quantitative Sciences<\/a>\u00a0at 国产传媒<br \/>\nOur collaborators for advanced statistical modeling and analysis of molecular omics results for basic science, translational, and clinical research projects<\/li>\n<li><a href=\"https:\/\/lab.vanderbilt.edu\/microbiome\/\" target=\"_blank\" rel=\"noopener\">国产传媒 Microbiome Innovation Center<\/a> (VMIC)<br \/>\nVMIC coordinates and accelerates interdisciplinary scholarship to establish long-lasting resources in microbiome research and education. This effort brings together approximately 300 members (faculty, staff, students) from six 国产传媒 schools to understand, translate, and disseminate the principles that shape host-microbiome interactions, microbial genomics and metabolism, intimate symbiotic relationships, virology, epidemiology, statistical modeling, and applications for precision medicine.<\/li>\n<li><a href=\"http:\/\/metabolomicssociety.org\/\" target=\"_blank\" rel=\"nofollow noopener\">Metabolomics Society<\/a><\/li>\n<li><a href=\"http:\/\/www.asms.org\/\" target=\"_blank\" rel=\"nofollow noopener\">American Society for Mass Spectrometry<\/a><\/li>\n<li><a href=\"https:\/\/epi.grants.cancer.gov\/Consortia\/mQACC\/\" target=\"_blank\" rel=\"noopener\">Metabolomics Quality Assurance and Control Consortium (mQACC)<\/a><\/li>\n<li>Metabolomics Databases\/Libraries:\n<ul>\n<li><a href=\"https:\/\/metlin.scripps.edu\/index.php\" target=\"_blank\" rel=\"nofollow noopener\">Metlin<\/a><\/li>\n<li><a href=\"https:\/\/www.nist.gov\/\" target=\"_blank\" rel=\"nofollow noopener\">NIST<\/a><\/li>\n<li><a href=\"http:\/\/www.hmdb.ca\/\" target=\"_blank\" rel=\"nofollow noopener\">HMDB<\/a><\/li>\n<li><a href=\"http:\/\/www.massbank.jp\/?lang=en\" target=\"_blank\" rel=\"nofollow noopener\">MassBank<\/a><\/li>\n<li><a href=\"http:\/\/www.lipidmaps.org\/\" target=\"_blank\" rel=\"nofollow noopener\">LipidMAPS<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Open Source Data Analysis\u00a0Software:\n<ul>\n<li><a href=\"http:\/\/www.metaboanalyst.ca\/\" target=\"_blank\" rel=\"nofollow noopener\">Metaboanalyst<\/a><\/li>\n<li><a href=\"http:\/\/www.cytoscape.org\/\" target=\"_blank\" rel=\"nofollow noopener\">Cytoscape<\/a><\/li>\n<li><a href=\"https:\/\/shuzhao-li.github.io\/mummichog.org\/index.html\" target=\"_blank\" rel=\"nofollow noopener\">Mummichog<\/a><\/li>\n<li><a href=\"https:\/\/xcmsonline.scripps.edu\/landing_page.php?pgcontent=mainPage\" target=\"_blank\" rel=\"nofollow noopener\">XCMS<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ol>\n<\/div><\/section><\/p><\/div><div  style='height:30px' class='hr hr-invisible   avia-builder-el-10  el_after_av_one_half  avia-builder-el-last '><span class='hr-inner ' ><span class='hr-inner-style'><\/span><\/span><\/div><\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":959,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages\/229"}],"collection":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/users\/959"}],"replies":[{"embeddable":true,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/comments?post=229"}],"version-history":[{"count":70,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages\/229\/revisions"}],"predecessor-version":[{"id":1660,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages\/229\/revisions\/1660"}],"wp:attachment":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/media?parent=229"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}